Transcript: ENST00000513688.1 HARS2-011

Description

histidyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:4817]

Gene Synonyms

HARSL, HARSR, HO3, PRLTS2

Location

Chromosome 5: 140,073,061-140,075,741 forward strand.

About this transcript

This transcript has 6 exons, is associated with 1196 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSG00000112855.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000230771.3	HARS2-001	2483	506aa	ENSP00000230771.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4238	P49590	NM_012208.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435019.2	HARS2-202	2340	466aa	ENSP00000412887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JV49	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437649.2	HARS2-203	2238	432aa	ENSP00000411708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PG66	NM_001278732.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432671.2	HARS2-201	2118	392aa	ENSP00000415007.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JHI8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508522.1	HARS2-003	1562	481aa	ENSP00000423616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64267	B4DDY8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448069.2	HARS2-004	1426	334aa	ENSP00000407105.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DQ67	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509299.1	HARS2-009	649	181aa	ENSP00000425695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB22 D6RJE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503873.1	HARS2-008	541	116aa	ENSP00000424516.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB22	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510104.1	HARS2-002	1450	99aa	ENSP00000423530.1	Nonsense mediated decay		D6R9M5	-	-
ENST00000520095.1	HARS2-012	564	99aa	ENSP00000429220.1	Nonsense mediated decay		D6R9M5	-	-
ENST00000502303.1	HARS2-005	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513688.1	HARS2-011	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511913.1	HARS2-006	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506318.1	HARS2-007	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513912.1	HARS2-010	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 694 bps,

Version

ENST00000513688.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372876 (version 1)

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Transcript: ENST00000513688.1 HARS2-011

Summary