Transcript: ENST00000229304.4 APOBEC1-001

Description

apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 [Source:HGNC Symbol;Acc:604]

Gene Synonyms

APOBEC-1, BEDP, CDAR1, HEPR

Location

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 8477 variant alleles and maps to 325 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229304.4	APOBEC1-001	879	236aa	ENSP00000229304.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8579	P41238	NM_001644.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467171.2	APOBEC1-002	861	36aa	ENSP00000436415.2	Nonsense mediated decay		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 879 bps, Translation length: 236 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41238

CCDS

This transcript is a member of the Human CCDS set: CCDS8579

Version

ENST00000229304.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000280523 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.