Transcript: ENST00000338700.5 TRIM2-001

Description

tripartite motif containing 2 [Source:HGNC Symbol;Acc:15974]

Gene Synonyms

CMT2R, KIAA0517, RNF86

Location

Chromosome 4: 154,125,618-154,260,472 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 33 domains and features, is associated with 57213 variant alleles and maps to 561 oligo probes.

Gene

This transcript is a product of gene ENSG00000109654.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000338700.5	TRIM2-001	6735	771aa	ENSP00000339659.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3781	C9J084 C9JVI3 Q9C040	NM_015271.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437508.2	TRIM2-004	3832	744aa	ENSP00000415812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47147	C9J084 C9JVI3 Q9C040	NM_001130067.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433687.1	TRIM2-010	654	110aa	ENSP00000400375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J084	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441616.1	TRIM2-006	583	138aa	ENSP00000400879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JVI3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494872.1	TRIM2-005	2202	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479711.1	TRIM2-009	909	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502281.1	TRIM2-013	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496978.1	TRIM2-008	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491446.1	TRIM2-007	513	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482578.1	TRIM2-002	766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460908.1	TRIM2-011	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 6,735 bps, Translation length: 771 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9C040

CCDS

This transcript is a member of the Human CCDS set: CCDS3781

Version

ENST00000338700.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000342649 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000338700.5 TRIM2-001

Summary