Transcript: ENST00000533157.1 FRG1-007

Description

FSHD region gene 1 [Source:HGNC Symbol;Acc:3954]

Gene Synonyms

FRG1A, FSG1

Location

Chromosome 4: 190,862,054-190,876,305 forward strand.

About this transcript

This transcript has 6 exons, is associated with 7820 variant alleles and maps to 419 oligo probes.

Gene

This transcript is a product of gene ENSG00000109536.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000226798.4	FRG1-001	1074	258aa	ENSP00000226798.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34121	E9PRR7 Q14331	NM_004477.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524583.1	FRG1-006	755	102aa	ENSP00000435067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLY7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531991.2	FRG1-008	738	116aa	ENSP00000435943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PRR7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533157.1	FRG1-007	714	42aa	ENSP00000436535.1	Nonsense mediated decay		E9PI42	-	-
ENST00000507103.1	FRG1-003	421	84aa	ENSP00000462603.1	Nonsense mediated decay		J3KSQ7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514482.1	FRG1-005	838	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505327.1	FRG1-002	340	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 714 bps, Translation length: 42 residues

Version

ENST00000533157.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388852 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

Favourite species

All species

Recent locations

Transcript: ENST00000533157.1 FRG1-007

Summary