Transcript: ENST00000585320.1 PNPO-007

Description

pyridoxamine 5'-phosphate oxidase [Source:HGNC Symbol;Acc:30260]

Gene Synonyms

HEL-S-302, PDXPO

Location

Chromosome 17: 46,018,984-46,024,115 forward strand.

About this transcript

This transcript has 4 exons, is associated with 2312 variant alleles and maps to 125 oligo probes.

Gene

This transcript is a product of gene ENSG00000108439.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225573.4	PNPO-001	2397	261aa	ENSP00000225573.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11522	B4E0V0 J3QQV6 J3QQZ9 Q9NVS9	NM_018129.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434554.2	PNPO-002	1210	218aa	ENSP00000399960.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E152 J3QQZ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544840.1	PNPO-202	1196	243aa	ENSP00000446182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E1D7 J3QQZ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534893.1	PNPO-201	1152	166aa	ENSP00000437480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E0V0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583599.1	PNPO-008	560	120aa	ENSP00000463919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQV6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582171.1	PNPO-003	1152	69aa	ENSP00000463994.1	Nonsense mediated decay		J3KS77 J3QQZ9	-	-
ENST00000583245.1	PNPO-004	887	72aa	ENSP00000463520.1	Nonsense mediated decay		J3QLF1 J3QQZ9	-	-
ENST00000584061.1	PNPO-005	537	46aa	ENSP00000463972.1	Nonsense mediated decay		J3QQZ9	-	-
ENST00000585320.1	PNPO-007	503	69aa	ENSP00000462345.1	Nonsense mediated decay		J3KS77 J3QQZ9	-	-
ENST00000584806.1	PNPO-006	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 503 bps, Translation length: 69 residues

Version

ENST00000585320.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441408 (version 1)

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Transcript: ENST00000585320.1 PNPO-007

Summary