Transcript: ENST00000465708.1 GLIS3-009

Description

GLIS family zinc finger 3 [Source:HGNC Symbol;Acc:28510]

Gene Synonyms

MGC33662, ZNF515

Location

Chromosome 9: 4,285,539-4,299,916 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 10005 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000107249.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381971.3	GLIS3-008	3961	930aa	ENSP00000371398.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43784	Q1PHI3 Q1PHJ2 Q1PHJ7 Q1PHJ8 Q1PHK4 Q8NEA6	NM_001042413.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000324333.10	GLIS3-003	6667	775aa	ENSP00000325494.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6451	Q1PHI3 Q1PHJ2 Q1PHK4 Q8NEA6	NM_152629.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477901.1	GLIS3-010	1327	244aa	ENSP00000417794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q1PHI3 Q1PHJ2 Q1PHJ7 Q1PHJ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000481827.1	GLIS3-013	944	244aa	ENSP00000417883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q1PHI3 Q1PHJ2 Q1PHJ7 Q1PHJ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462164.1	GLIS3-017	700	89aa	ENSP00000418671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q1PHI3 Q1PHJ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478315.1	GLIS3-015	693	89aa	ENSP00000418995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q1PHI3 Q1PHJ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478844.1	GLIS3-012	458	89aa	ENSP00000418005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q1PHI3 Q1PHJ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491889.1	GLIS3-011	797	142aa	ENSP00000419914.1	Nonsense mediated decay		F8WEV9	-	-
ENST00000461870.1	GLIS3-019	4166	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471664.1	GLIS3-021	1569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469833.1	GLIS3-018	773	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490709.1	GLIS3-001	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464391.1	GLIS3-007	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473846.1	GLIS3-016	492	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467497.2	GLIS3-005	1585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465708.1	GLIS3-009	1481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463680.1	GLIS3-020	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,481 bps,

Version

ENST00000465708.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354777 (version 1)

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Transcript: ENST00000465708.1 GLIS3-009

Summary