Transcript: ENST00000520104.1 POU6F2-007

Description

POU class 6 homeobox 2 [Source:HGNC Symbol;Acc:21694]

Gene Synonyms

RPF-1, RPF1, WT5, WTSL

Location

Chromosome 7: 39,124,655-39,472,882 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 137461 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000106536.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000403058.1	POU6F2-002	2335	691aa	ENSP00000384004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34620	H0YL15 P78424	NM_007252.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518318.2	POU6F2-001	5925	655aa	ENSP00000430514.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55103	H0YL15 P78424	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559001.1	POU6F2-012	2407	636aa	ENSP00000452633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK27 H0YKR5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524147.1	POU6F2-006	1485	412aa	ENSP00000452911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKR5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520104.1	POU6F2-007	1290	403aa	ENSP00000453020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451021.1	POU6F2-003	570	144aa	ENSP00000409684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JSC0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464276.2	POU6F2-004	530	62aa	ENSP00000475747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQC3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416452.1	POU6F2-005	1028	142aa	ENSP00000404868.1	Nonsense mediated decay		H7C2B2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000517348.1	POU6F2-008	1578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000426456.1	POU6F2-009	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,290 bps, Translation length: 403 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000520104.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000377033 (version 2)

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Transcript: ENST00000520104.1 POU6F2-007

Summary