Transcript: ENST00000324306.6 ZKSCAN1-001

Description

zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:13101]

Gene Synonyms

9130423L19Rik, KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33

Location

Chromosome 7: 99,613,204-99,639,312 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 45 domains and features, is associated with 11968 variant alleles and maps to 741 oligo probes.

Gene

This transcript is a product of gene ENSG00000106261.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324306.6	ZKSCAN1-001	9418	563aa	ENSP00000323148.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34698	B3KRF7 C9JRM9 E9PC66 P17029	NM_003439.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535170.1	ZKSCAN1-201	3754	350aa	ENSP00000443508.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KRF7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426572.1	ZKSCAN1-003	2011	527aa	ENSP00000409172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69349	B3KRF7 E9PC66	NM_001287054.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432317.1	ZKSCAN1-004	573	125aa	ENSP00000394445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JRM9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482979.1	ZKSCAN1-002	1449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 9,418 bps, Translation length: 563 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17029

CCDS

This transcript is a member of the Human CCDS set: CCDS34698

Version

ENST00000324306.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000344550 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000324306.6 ZKSCAN1-001

Summary