Transcript: ENST00000242770.5 STX10-004

Description

syntaxin 10 [Source:HGNC Symbol;Acc:11428]

Gene Synonyms

SYN10, hsyn10

Location

Chromosome 19: 13,254,876-13,260,992 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 3563 variant alleles and maps to 350 oligo probes.

Gene

This transcript is a product of gene ENSG00000104915.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000587230.1	STX10-002	1136	249aa	ENSP00000466298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32922	K7EJ05 K7EPP9 O60499	NM_003765.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589083.1	STX10-005	1241	246aa	ENSP00000465398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62569	K7EJ05 K7EPP9 Q5U8S2	NM_001271610.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588848.1	STX10-011	1164	122aa	ENSP00000467479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ05 K7EPP9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000343587.5	STX10-003	1128	200aa	ENSP00000339350.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62571	O60499	NM_001271611.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000242770.5	STX10-004	1099	220aa	ENSP00000242770.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62570	K7EJ05	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591197.1	STX10-006	907	58aa	ENSP00000464970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ05	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000593126.1	STX10-007	713	201aa	ENSP00000466272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ05 K7ELY2 K7EPP9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587318.1	STX10-008	704	228aa	ENSP00000464943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJ05 K7EPP9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591415.1	STX10-009	291	97aa	ENSP00000467713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000591843.1	STX10-001	1073	113aa	ENSP00000465495.1	Nonsense mediated decay		K7EK75	-	-
ENST00000440593.3	STX10-010	940	73aa	ENSP00000415176.3	Nonsense mediated decay		F6RTM7	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,099 bps, Translation length: 220 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS62570

Version

ENST00000242770.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452916 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000242770.5 STX10-004

Summary