Transcript: ENST00000566078.1 CTCF-003

Description

CCCTC-binding factor (zinc finger protein) [Source:HGNC Symbol;Acc:13723]

Gene Synonyms

MRD21

Location

About this transcript

This transcript has 3 exons, is associated with 26972 variant alleles and maps to 99 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264010.4	CTCF-001	3939	727aa	ENSP00000264010.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10841	P49711	NM_006565.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401394.1	CTCF-002	2978	399aa	ENSP00000384707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54029	P49711	NM_001191022.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566078.1	CTCF-003	1627	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,627 bps,

Version

ENST00000566078.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000421179 (version 1)