Transcript: ENST00000535601.1 HTATSF1-201

Description

HIV-1 Tat specific factor 1 [Source:HGNC Symbol;Acc:5276]

Gene Synonyms

TAT-SF1, TATSF1, dJ196E23.2

Location

About this transcript

This transcript has 10 exons, is annotated with 20 domains and features, is associated with 4997 variant alleles and maps to 509 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000535601.1	HTATSF1-201	3019	755aa	ENSP00000442699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14657	O43719 Q5H918 Q5H919	NM_001163280.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000218364.4	HTATSF1-001	2775	755aa	ENSP00000218364.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14657	O43719 Q5H918 Q5H919	NM_014500.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448450.1	HTATSF1-002	1014	244aa	ENSP00000411381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5H918 Q5H919	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425695.1	HTATSF1-003	885	223aa	ENSP00000412420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5H919	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,019 bps, Translation length: 755 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43719

CCDS

This transcript is a member of the Human CCDS set: CCDS14657

Version

ENST00000535601.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.