Transcript: ENST00000583384.1 RNF125-003

Description

ring finger protein 125, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:21150]

Gene Synonyms

FLJ20456, TRAC-1, TRAC1

Location

About this transcript

This transcript has 5 exons, is associated with 11625 variant alleles and maps to 181 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000217740.3	RNF125-001	6020	232aa	ENSP00000217740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11902	Q96EQ8	NM_017831.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580209.1	RNF125-002	416	40aa	ENSP00000463935.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583384.1	RNF125-003	647	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583814.1	RNF125-004	712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580863.1	RNF125-005	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 647 bps,

Version

ENST00000583384.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447727 (version 1)