Transcript: ENST00000377475.3 SEC23B-002

Description

Sec23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10702]

Gene Synonyms

CDA-II, CDAII, CDAN2, HEMPAS

Location

Chromosome 20: 18,488,223-18,542,059 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 17 domains and features, is associated with 23471 variant alleles and maps to 738 oligo probes.

Gene

This transcript is a product of gene ENSG00000101310.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336714.3	SEC23B-003	3411	767aa	ENSP00000338844.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13137	B4DS04 Q15437 Q5QPE2	NM_032986.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377475.3	SEC23B-002	3405	767aa	ENSP00000366695.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13137	B4DS04 Q15437 Q5QPE2	NM_001172746.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377465.1	SEC23B-004	3229	767aa	ENSP00000366685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13137	B4DS04 Q15437 Q5QPE2	NM_001172745.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262544.2	SEC23B-005	3176	767aa	ENSP00000262544.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13137	B4DS04 Q15437 Q5QPE2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450074.1	SEC23B-001	1184	331aa	ENSP00000403971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QPE2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422877.1	SEC23B-008	834	246aa	ENSP00000409882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QPE1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494645.1	SEC23B-007	473	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474619.1	SEC23B-006	232	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 3,405 bps, Translation length: 767 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15437

CCDS

This transcript is a member of the Human CCDS set: CCDS13137

Version

ENST00000377475.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000104882 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000377475.3 SEC23B-002

Summary