Transcript: ENST00000555933.1 TRIM9-006

Description

tripartite motif containing 9 [Source:HGNC Symbol;Acc:16288]

Gene Synonyms

KIAA0282, RNF91, SPRING

Location

Chromosome 14: 51,449,583-51,453,170 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1434 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSG00000100505.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298355.3	TRIM9-001	5284	710aa	ENSP00000298355.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9703	Q9C026	NM_015163.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360392.4	TRIM9-003	3726	550aa	ENSP00000353561.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45105	Q9C026	NM_052978.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338969.5	TRIM9-002	3312	802aa	ENSP00000342970.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C026	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557456.1	TRIM9-005	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555933.1	TRIM9-006	640	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555170.1	TRIM9-007	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 640 bps,

Version

ENST00000555933.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411203 (version 1)

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Transcript: ENST00000555933.1 TRIM9-006

Summary