Transcript: ENST00000427990.1 APOL1-011

Description

apolipoprotein L, 1 [Source:HGNC Symbol;Acc:618]

Gene Synonyms

APO-L, APOL, APOL-I, FSGS4

Location

Chromosome 22: 36,649,179-36,661,361 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 6042 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000100342.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319136.4	APOL1-003	3000	414aa	ENSP00000317674.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13925	B1AH96 G8JL88 O14791	NM_145343.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397278.3	APOL1-001	2918	398aa	ENSP00000380448.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13926	B1AH96 G8JL88 O14791	NM_003661.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422706.1	APOL1-203	2901	398aa	ENSP00000411507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13926	B1AH96 G8JL88 O14791	NM_001136540.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426053.1	APOL1-204	2808	380aa	ENSP00000388477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46702	G8JL88 O14791	NM_001136541.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397279.4	APOL1-202	1564	398aa	ENSP00000380449.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13926	B1AH96 G8JL88 O14791	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347595.7	APOL1-201	1223	277aa	ENSP00000216178.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G8JL88	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440669.2	APOL1-205	1033	141aa	ENSP00000397625.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AH95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427990.1	APOL1-011	624	159aa	ENSP00000391302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AH96	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000438034.1	APOL1-009	566	118aa	ENSP00000404525.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AH94	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000433768.1	APOL1-013	541	141aa	ENSP00000392514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AH95	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422471.1	APOL1-008	561	141aa	ENSP00000391206.1	Nonsense mediated decay		B1AH95	-	-
ENST00000431184.1	APOL1-014	550	142aa	ENSP00000392857.1	Nonsense mediated decay		F8WCH3	-	-
ENST00000439680.1	APOL1-012	531	123aa	ENSP00000397141.1	Nonsense mediated decay		F8WB77	-	-
ENST00000475519.1	APOL1-010	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 624 bps, Translation length: 159 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000427990.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000319154 (version 1)

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Transcript: ENST00000427990.1 APOL1-011

Summary