Transcript: ENST00000586835.1 TMED1-004

Description

transmembrane emp24 protein transport domain containing 1 [Source:HGNC Symbol;Acc:17291]

Gene Synonyms

IL1RL1L, IL1RL1LG, Il1rl1l, MGC1270, ST2L, Tp24

Location

Chromosome 19: 10,943,363-10,945,680 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1235 variant alleles and maps to 230 oligo probes.

Gene

This transcript is a product of gene ENSG00000099203.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000214869.2	TMED1-001	1340	227aa	ENSP00000214869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12249	K7EIN4 Q13445	NM_006858.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591695.1	TMED1-006	809	185aa	ENSP00000468294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586835.1	TMED1-004	713	65aa	ENSP00000464856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589638.1	TMED1-007	578	191aa	ENSP00000467690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQ63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588289.1	TMED1-003	541	82aa	ENSP00000464824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIN4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591157.1	TMED1-002	717	95aa	ENSP00000468492.1	Nonsense mediated decay		K7ES06	-	-
ENST00000588259.1	TMED1-005	616	74aa	ENSP00000468054.1	Nonsense mediated decay		K7ER03	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 713 bps, Translation length: 65 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000586835.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452615 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000586835.1 TMED1-004

Summary