Transcript: ENST00000318080.2 CRAT-006

Description

carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]

Gene Synonyms

CAT1

Location

Chromosome 9: 131,857,089-131,873,083 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 7 domains and features, is associated with 8027 variant alleles and maps to 758 oligo probes.

Gene

This transcript is a product of gene ENSG00000095321.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318080.2	CRAT-006	2763	626aa	ENSP00000315013.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6919	P43155	NM_001257363.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393384.3	CRAT-004	973	161aa	ENSP00000377045.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVN3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455396.1	CRAT-010	795	201aa	ENSP00000395458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000455830.2	CRAT-012	595	98aa	ENSP00000390571.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZBP5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000458362.1	CRAT-002	2253	40aa	ENSP00000400367.1	Nonsense mediated decay		F2Z2C5	-	-
ENST00000441796.1	CRAT-005	831	40aa	ENSP00000404405.1	Nonsense mediated decay		F2Z2C5	-	-
ENST00000415948.1	CRAT-007	800	31aa	ENSP00000394420.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000464290.1	CRAT-003	867	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467343.1	CRAT-011	399	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,763 bps, Translation length: 626 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P43155

CCDS

This transcript is a member of the Human CCDS set: CCDS6919

Version

ENST00000318080.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253700 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000318080.2 CRAT-006

Summary