Transcript: ENST00000374692.3 TMEM38B-001

Description

transmembrane protein 38B [Source:HGNC Symbol;Acc:25535]

Gene Synonyms

C9orf87, D4Ertd89e, FLJ10493, OI14, TRIC-B, TRICB, bA219P18.1

Location

Chromosome 9: 108,456,825-108,538,893 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 37021 variant alleles and maps to 499 oligo probes.

Gene

This transcript is a product of gene ENSG00000095209.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374692.3	TMEM38B-001	3525	291aa	ENSP00000363824.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6768	Q9NVV0	NM_018112.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374688.1	TMEM38B-002	3956	237aa	ENSP00000363820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435034.1	TMEM38B-003	721	162aa	ENSP00000410800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434214.1	TMEM38B-005	502	35aa	ENSP00000403026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451560.1	TMEM38B-004	451	81aa	ENSP00000416680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,525 bps, Translation length: 291 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NVV0

CCDS

This transcript is a member of the Human CCDS set: CCDS6768

Version

ENST00000374692.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000053517 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000374692.3 TMEM38B-001

Summary