Transcript: ENST00000481939.1 PUS7-003

Description

pseudouridylate synthase 7 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26033]

Gene Synonyms

FLJ20485, KIAA1897

Location

Chromosome 7: 105,080,108-105,162,714 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 9 domains and features, is associated with 39149 variant alleles and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSG00000091127.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356362.2	PUS7-002	3480	661aa	ENSP00000348722.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34725	A3R6R7 Q96PZ0	NM_019042.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469408.1	PUS7-001	2356	661aa	ENSP00000417402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34725	A3R6R7 Q96PZ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482157.1	PUS7-006	395	132aa	ENSP00000417718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3R6R7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000481939.1	PUS7-003	2436	448aa	ENSP00000418794.1	Nonsense mediated decay		A3R6R7 E7EUH7	-	-
ENST00000478208.1	PUS7-005	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487277.1	PUS7-004	275	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 11, Transcript length: 2,436 bps, Translation length: 448 residues

Version

ENST00000481939.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000348682 (version 1)

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Transcript: ENST00000481939.1 PUS7-003

Summary