Transcript: ENST00000539287.1 UNG-003

Description

uracil-DNA glycosylase [Source:HGNC Symbol;Acc:12572]

Gene Synonyms

DGU, HIGM4, HIGM5, UDG, UNG1, UNG15, UNG2

Location

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 6791 variant alleles and maps to 448 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000242576.2	UNG-001	2071	313aa	ENSP00000242576.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9124	E5KTA5 P13051	NM_080911.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336865.2	UNG-005	2130	304aa	ENSP00000337398.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9125	E5KTA6 F5GYA2 P13051	NM_003362.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539287.1	UNG-003	2234	258aa	ENSP00000440784.1	Nonsense mediated decay		F5GYA2	-	-
ENST00000446767.2	UNG-002	2016	141aa	ENSP00000400287.2	Nonsense mediated decay		Q68DM5	-	-
ENST00000540158.1	UNG-006	498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,234 bps, Translation length: 258 residues

Version

ENST00000539287.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000403070 (version 1)

Annotation Attributes

dotter confirmed [Definitions]