Transcript: ENST00000164305.5 PIGB-001

Description

phosphatidylinositol glycan anchor biosynthesis, class B [Source:HGNC Symbol;Acc:8959]

Gene Synonyms

GPI-MT-III, PIG-B

Location

Chromosome 15: 55,611,158-55,647,846 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 16178 variant alleles and maps to 540 oligo probes.

Gene

This transcript is a product of gene ENSG00000069943.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000164305.5	PIGB-001	2172	554aa	ENSP00000164305.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61641	F5H1S1 Q92521	NM_004855.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539642.1	PIGB-201	1812	359aa	ENSP00000438963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1S1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566999.1	PIGB-005	773	255aa	ENSP00000456531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BS45	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565367.1	PIGB-002	1812	134aa	ENSP00000455943.1	Nonsense mediated decay		H3BQU3	-	-
ENST00000565502.1	PIGB-008	781	88aa	ENSP00000455040.1	Nonsense mediated decay		H3BNW7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570059.1	PIGB-004	582	58aa	ENSP00000456285.1	Nonsense mediated decay		H3BRK6	-	-
ENST00000569909.1	PIGB-006	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566072.1	PIGB-007	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569823.1	PIGB-009	455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563742.1	PIGB-003	1937	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562751.1	PIGB-011	753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565402.1	PIGB-010	648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,172 bps, Translation length: 554 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92521

CCDS

This transcript is a member of the Human CCDS set: CCDS61641

Version

ENST00000164305.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000419687 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000164305.5 PIGB-001

Summary