Transcript: ENST00000173229.2 NTN1-001

Description

netrin 1 [Source:HGNC Symbol;Acc:8029]

Gene Synonyms

NTN1L

Location

About this transcript

This transcript has 7 exons, is annotated with 36 domains and features, is associated with 101900 variant alleles and maps to 394 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000173229.2	NTN1-001	5954	604aa	ENSP00000173229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11148	O95631	NM_004822.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538852.1	NTN1-201	5953	604aa	ENSP00000443259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11148	O95631	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546090.1	NTN1-202	5918	604aa	ENSP00000441611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11148	O95631	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436734.1	NTN1-002	700	153aa	ENSP00000389375.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZF4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 5,954 bps, Translation length: 604 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95631

CCDS

This transcript is a member of the Human CCDS set: CCDS11148

Version

ENST00000173229.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000252583 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.