Transcript: ENST00000565406.1 NTHL1-008

Description

nth endonuclease III-like 1 (E. coli) [Source:HGNC Symbol;Acc:8028]

Gene Synonyms

NTH1, OCTS3

Location

Chromosome 16: 2,089,821-2,094,827 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 3289 variant alleles and maps to 227 oligo probes.

Gene

This transcript is a product of gene ENSG00000065057.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219066.1	NTHL1-001	1067	312aa	ENSP00000219066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10457	E5KTI5 P78549	NM_002528.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566380.1	NTHL1-003	814	236aa	ENSP00000455267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561841.1	NTHL1-007	1052	218aa	ENSP00000456301.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568513.1	NTHL1-004	837	100aa	ENSP00000457818.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000562951.1	NTHL1-006	523	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565406.1	NTHL1-008	691	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567727.1	NTHL1-009	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561862.1	NTHL1-010	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562120.1	NTHL1-005	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 691 bps,

Version

ENST00000565406.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000434458 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000565406.1 NTHL1-008

Summary