Transcript: ENST00000366541.3 SDCCAG8-001

Description

serologically defined colon cancer antigen 8 [Source:HGNC Symbol;Acc:10671]

Gene Synonyms

BBS16, CCCAP, CCCAP SLSN7, NPHP10, NY-CO-8, SLSN7, hCCCAP

Location

Chromosome 1: 243,419,358-243,663,394 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 11 domains and features, is associated with 100426 variant alleles and maps to 572 oligo probes.

Gene

This transcript is a product of gene ENSG00000054282.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366541.3	SDCCAG8-001	2567	713aa	ENSP00000355499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31075	A6NCS9 Q86SQ7	NM_006642.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355875.4	SDCCAG8-202	2470	670aa	ENSP00000348137.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PFS7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343783.6	SDCCAG8-201	2198	568aa	ENSP00000341260.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NCS9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476722.2	SDCCAG8-003	1871	155aa	ENSP00000473868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435549.1	SDCCAG8-002	1551	414aa	ENSP00000410200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86SQ7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000391846.1	SDCCAG8-203	1239	360aa	ENSP00000375721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86SQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496361.1	SDCCAG8-007	947	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493334.1	SDCCAG8-004	711	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490065.1	SDCCAG8-006	699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463042.1	SDCCAG8-009	626	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482234.1	SDCCAG8-011	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497459.1	SDCCAG8-010	525	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463012.1	SDCCAG8-008	430	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491888.1	SDCCAG8-005	286	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,567 bps, Translation length: 713 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86SQ7

CCDS

This transcript is a member of the Human CCDS set: CCDS31075

Version

ENST00000366541.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000096485 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000366541.3 SDCCAG8-001

Summary