Transcript: ENST00000400790.3 ARID1B-006

Description

AT rich interactive domain 1B (SWI1-like) [Source:HGNC Symbol;Acc:18040]

Gene Synonyms

6A3-5, BAF250B, BAF250b, BRIGHT, DAN15, ELD/OSA1, KIAA1235, MRD12, OSA2, P250R, p250R

Location

Chromosome 6: 157,470,045-157,507,744 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 17736 variant alleles and maps to 199 oligo probes.

Gene

This transcript is a product of gene ENSG00000049618.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000346085.5	ARID1B-001	9639	2249aa	ENSP00000344546.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55072	Q8NFD5	NM_020732.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367148.1	ARID1B-202	8246	2289aa	ENSP00000356116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XAA0 Q8NFD5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000275248.4	ARID1B-201	8224	2231aa	ENSP00000275248.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XAA0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350026.5	ARID1B-009	7971	2236aa	ENSP00000055163.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5251	Q8NFD5	NM_017519.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414678.2	ARID1B-005	6653	1758aa	ENSP00000412835.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y7H8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000400790.3	ARID1B-006	2887	273aa	ENSP00000383596.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y3S9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000319584.6	ARID1B-004	2202	728aa	ENSP00000313006.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y2R3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478761.2	ARID1B-003	936	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494260.1	ARID1B-008	481	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000452544.1	ARID1B-002	4389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493658.1	ARID1B-007	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,887 bps, Translation length: 273 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000400790.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000042832 (version 2)

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Transcript: ENST00000400790.3 ARID1B-006

Summary