Transcript: ENST00000485545.1 RFC2-012

Description

replication factor C (activator 1) 2, 40kDa [Source:HGNC Symbol;Acc:9970]

Gene Synonyms

A1, RFC40

Location

Chromosome 7: 73,646,104-73,654,337 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 3639 variant alleles and maps to 397 oligo probes.

Gene

This transcript is a product of gene ENSG00000049541.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000055077.3	RFC2-002	1695	354aa	ENSP00000055077.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5568	F8WDC9 P35250	NM_181471.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352131.3	RFC2-001	1576	320aa	ENSP00000275627.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5567	F8WDC9 P35250 Q75MT5	NM_002914.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479105.2	RFC2-009	957	52aa	ENSP00000420392.2	Nonsense mediated decay		H7C5S7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000470266.1	RFC2-004	881	75aa	ENSP00000420513.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480432.1	RFC2-006	871	77aa	ENSP00000418899.1	Nonsense mediated decay		F8WC37 F8WDC9	-	-
ENST00000463194.1	RFC2-005	853	101aa	ENSP00000419827.1	Nonsense mediated decay		F8WDC9 H7C5G4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000485545.1	RFC2-012	847	120aa	ENSP00000419320.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493156.2	RFC2-003	782	37aa	ENSP00000420563.1	Nonsense mediated decay		F8WDC9	-	-
ENST00000497430.1	RFC2-011	753	198aa	ENSP00000420404.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494019.1	RFC2-008	730	87aa	ENSP00000419341.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000491206.1	RFC2-010	726	28aa	ENSP00000420731.1	Nonsense mediated decay		H7C5S7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473493.1	RFC2-007	304	90aa	ENSP00000436840.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 847 bps, Translation length: 120 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000485545.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351345 (version 1)

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Transcript: ENST00000485545.1 RFC2-012

Summary