Transcript: ENST00000381118.3 ERCC8-003

Description

excision repair cross-complementing rodent repair deficiency, complementation group 8 [Source:HGNC Symbol;Acc:3439]

Gene Synonyms

CKN1, CSA, UVSS2

Location

Chromosome 5: 60,169,658-60,240,878 reverse strand.

About this transcript

This transcript has 13 exons, is associated with 31731 variant alleles and maps to 613 oligo probes.

Gene

This transcript is a product of gene ENSG00000049167.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265038.5	ERCC8-001	2017	396aa	ENSP00000265038.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3978	B3KPW7 C9JNT2 G3XAG7 Q13216	NM_000082.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426742.2	ERCC8-201	2236	338aa	ENSP00000400110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KPW7 C9JNT2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543101.1	ERCC8-202	1554	243aa	ENSP00000441732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DGZ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439176.1	ERCC8-005	684	134aa	ENSP00000408344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JNT2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000381118.3	ERCC8-003	2236	57aa	ENSP00000370510.3	Nonsense mediated decay		G3XAG7	-	-
ENST00000462279.1	ERCC8-004	3424	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495985.1	ERCC8-008	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484330.1	ERCC8-007	471	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497892.1	ERCC8-002	881	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477893.1	ERCC8-006	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 3, Transcript length: 2,236 bps, Translation length: 57 residues

Version

ENST00000381118.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000332606 (version 1)

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Transcript: ENST00000381118.3 ERCC8-003

Summary