Transcript: ENST00000503857.1 YTHDC2-003

Description

YTH domain containing 2 [Source:HGNC Symbol;Acc:24721]

Gene Synonyms

CAHL, DKFZp564A186, FLJ10053, FLJ2194

Location

Chromosome 5: 112,849,391-112,896,893 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 5 domains and features, is associated with 23522 variant alleles and maps to 389 oligo probes.

Gene

This transcript is a product of gene ENSG00000047188.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000161863.4	YTHDC2-001	6316	1430aa	ENSP00000161863.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4113	D6RA70 Q9H6S0	NM_022828.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515883.1	YTHDC2-002	2629	739aa	ENSP00000423101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA70	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514720.1	YTHDC2-007	536	137aa	ENSP00000422916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9T8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503857.1	YTHDC2-003	2138	98aa	ENSP00000426644.1	Nonsense mediated decay		D6RF50	-	-
ENST00000512600.1	YTHDC2-005	6708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506333.1	YTHDC2-008	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507567.1	YTHDC2-006	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 3, Transcript length: 2,138 bps, Translation length: 98 residues

Version

ENST00000503857.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370843 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000503857.1 YTHDC2-003

Summary