Transcript: ENST00000315251.6 CHDH-001

Description

choline dehydrogenase [Source:HGNC Symbol;Acc:24288]

Location

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 15486 variant alleles and maps to 741 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315251.6	CHDH-001	7665	594aa	ENSP00000319851.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2873	B4DMQ4 C9J7D8 C9JYW4 Q8NE62	NM_018397.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481668.1	CHDH-003	631	155aa	ENSP00000418273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7D8 C9JYW4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000467802.1	CHDH-002	565	126aa	ENSP00000419863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYW4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 7,665 bps, Translation length: 594 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NE62

CCDS

This transcript is a member of the Human CCDS set: CCDS2873

Version

ENST00000315251.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000350567 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.