Transcript: ENST00000541639.1 KDM5D-201

Description

lysine (K)-specific demethylase 5D [Source:HGNC Symbol;Acc:11115]

Gene Synonyms

HY, HYA, JARID1D, KIAA0234, SMCY

Location

Chromosome Y: 21,867,303-21,906,825 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 43 domains and features, is associated with 2929 variant alleles and maps to 844 oligo probes.

Gene

This transcript is a product of gene ENSG00000012817.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000317961.4	KDM5D-001	5472	1539aa	ENSP00000322408.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14794	Q9BY66	NM_004653.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541639.1	KDM5D-201	5579	1570aa	ENSP00000444293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55555	Q9BY66	NM_001146705.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382806.2	KDM5D-002	5134	1482aa	ENSP00000372256.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55554	Q9BY66	NM_001146706.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440077.1	KDM5D-004	4701	1476aa	ENSP00000398543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PFH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447300.1	KDM5D-003	1336	425aa	ENSP00000416377.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGA3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000415360.1	KDM5D-009	880	293aa	ENSP00000389433.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZF9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000469599.2	KDM5D-006	5501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492117.1	KDM5D-005	5235	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478891.1	KDM5D-008	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485154.1	KDM5D-007	792	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 5,579 bps, Translation length: 1,570 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BY66

CCDS

This transcript is a member of the Human CCDS set: CCDS55555

Version

ENST00000541639.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000541639.1 KDM5D-201

Summary