Transcript: ENST00000451681.1 LRRC23-004

Description

leucine rich repeat containing 23 [Source:HGNC Symbol;Acc:19138]

Gene Synonyms

B7, LRPB7

Location

Chromosome 12: 7,013,955-7,023,358 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 2 domains and features, is associated with 5892 variant alleles and maps to 505 oligo probes.

Gene

This transcript is a product of gene ENSG00000010626.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000007969.8	LRRC23-001	1629	343aa	ENSP00000007969.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8569	C9JQN5 Q53EV4	NM_201650.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443597.2	LRRC23-002	1628	343aa	ENSP00000390932.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8569	C9JQN5 Q53EV4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433346.1	LRRC23-011	1387	230aa	ENSP00000402554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKE8 C9JQN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323702.5	LRRC23-003	1208	312aa	ENSP00000317464.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8568	C9JQN5 Q53EV4	NM_006992.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436789.1	LRRC23-008	796	216aa	ENSP00000396049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEW3 C9JQN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429740.1	LRRC23-010	671	202aa	ENSP00000397192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQN5 E9PDZ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415834.1	LRRC23-013	572	94aa	ENSP00000408066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQN5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451681.1	LRRC23-004	1412	62aa	ENSP00000412744.1	Nonsense mediated decay		F2Z299	-	-
ENST00000431207.1	LRRC23-006	1140	62aa	ENSP00000392623.1	Nonsense mediated decay		F2Z299	-	-
ENST00000428946.1	LRRC23-005	969	62aa	ENSP00000394566.1	Nonsense mediated decay		F2Z299	-	-
ENST00000449039.1	LRRC23-014	729	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000457146.1	LRRC23-007	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472633.1	LRRC23-012	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486401.1	LRRC23-009	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 1,412 bps, Translation length: 62 residues

Version

ENST00000451681.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000345217 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000451681.1 LRRC23-004

Summary