Transcript: ENST00000440294.2 DLEC1-002

Description

deleted in lung and esophageal cancer 1 [Source:HGNC Symbol;Acc:2899]

Gene Synonyms

DLC1, F56

Location

Chromosome 3: 38,080,696-38,139,289 forward strand.

About this transcript

This transcript has 17 exons, is associated with 27906 variant alleles and maps to 529 oligo probes.

Gene

This transcript is a product of gene ENSG00000008226.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308059.6	DLEC1-001	6426	1755aa	ENSP00000308597.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2672	Q9Y238	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452631.2	DLEC1-202	5624	1758aa	ENSP00000410427.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1B5Y4 F8W6T4	NM_007335.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000346219.3	DLEC1-201	5491	1778aa	ENSP00000315914.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y238	NM_007337.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447130.1	DLEC1-005	533	82aa	ENSP00000404261.1	Nonsense mediated decay		Q32W76	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469151.1	DLEC1-004	220	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000440294.2	DLEC1-002	3457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478428.1	DLEC1-007	2841	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477260.1	DLEC1-008	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 0, Transcript length: 3,457 bps,

Version

ENST00000440294.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342524 (version 3)

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Transcript: ENST00000440294.2 DLEC1-002

Summary