Transcript: ENST00000580174.1 COPZ2-002

Description

coatomer protein complex, subunit zeta 2 [Source:HGNC Symbol;Acc:19356]

Gene Synonyms

MGC23008

Location

Chromosome 17: 46,111,258-46,115,392 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1877 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSG00000005243.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000006101.4	COPZ2-201	886	208aa	ENSP00000006101.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3QQQ5 Q9P299	NM_016429.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579263.1	COPZ2-006	746	79aa	ENSP00000463841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3QQQ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581756.1	COPZ2-003	686	141aa	ENSP00000462035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580174.1	COPZ2-002	157	9aa	ENSP00000463581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584955.1	COPZ2-009	713	116aa	ENSP00000464484.1	Nonsense mediated decay	J3QS21	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581637.1	COPZ2-005	590	56aa	ENSP00000463687.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583414.1	COPZ2-010	520	45aa	ENSP00000463413.1	Nonsense mediated decay	J3QL73	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584666.1	COPZ2-001	891	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000582553.1	COPZ2-004	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000580409.1	COPZ2-008	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000585182.1	COPZ2-007	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 157 bps, Translation length: 9 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000580174.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442957 (version 1)

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Transcript: ENST00000580174.1 COPZ2-002

Summary