Transcript: ENST00000517402.1 HOXA11-002

Description

homeobox A11 [Source:HGNC Symbol;Acc:5101]

Gene Synonyms

HOX1, HOX1I

Location

About this transcript

This transcript has 3 exons, is annotated with 14 domains and features, is associated with 2195 variant alleles and maps to 368 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000006015.3	HOXA11-001	2295	313aa	ENSP00000006015.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5411	P31270	NM_005523.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517402.1	HOXA11-002	2137	283aa	ENSP00000448962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,137 bps, Translation length: 283 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000517402.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000358755 (version 2)