Variation Pattern Finder

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This tool identifies variation patterns in a chromosomal region of interest for different individuals.

Name for this job (optional):

Species:

Human

Assembly: GRCh37.p13

Region Lookup:

e.g. 1:1-50000

Choose data collections or provide your own file URLs:

Genotype File URL:

Sample-population file URL: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/integrated_call_samples_v3.20130502.ALL.panelSample-population file URL: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/phase1_integrated_calls.20101123.ALL.panelSample-population file URL: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/integrated_call_male_samples_v3.20130502.ALL.panel

The genotype file should be VCF only.<a href="/info/website/upload/sample_files/Pulmonary_function.vcf.txt" class="popup"> Example VCF file </a>Genotype file URL:

e.g: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.chr1.phase3_shapeit2_mvncall_integrated_v5b.20130502.genotypes.vcf.gz

Choose whether to apply any filtering to the output.Filters:

No filtering

By individuals

By populations

This file lists all the individuals and the population they come from.<a href="/info/docs/tools/allelefrequency/sample_panel.html" class="popup">Find out more on what a panel file is.</a>Sample-population mapping file URL:

e.g: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/integrated_call_samples_v3.20130502.ALL.panel

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