Chromosome 1: 162,135,916-162,136,517

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GRC assembly patches, haplotype (HAPs) and pseudo autosomal regions (PARs)

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GRC assembly patches, haplotype (HAPs) and pseudo autosomal regions (PARs)

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Mappings between primary assembly and alternate loci or patches.

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GRC assembly patches, haplotype (HAPs) and pseudo autosomal regions (PARs)

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Protein coding sequences agreed upon by the Consensus Coding Sequence project, or CCDS.

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The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

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Human cDNAs from NCBI RefSeq are aligned to the genome using GeneWise.

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Human cDNAs from NCBI RefSeq are aligned to the genome using GeneWise.

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GRC assembly patches, haplotype (HAPs) and pseudo autosomal regions (PARs)

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Positions of UniGene sequences along the genome. These are determined using TBLASTN of Genscan predictions against UniGene sequences.

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Positions of UniGene sequences along the genome. These are determined using TBLASTN of Genscan predictions against UniGene sequences.

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The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

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Cytogenetic bands

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Timing of the most recent mutation as determined by inter-species whole genome alignments. Each base pair in which the human reference genome differs by substitution from one of its inferred ancestral genomes is colored in either grey (event prior to the primate branch), blue (primate specific), red (human specific, fixed variant), or yellow (human specific segregating variant, i.e. SNP). Clicking on a mutation position reveals the sub-tree of species which have inherited the same mutation from their common ancestor. It also reveals a score that represents the age of the mutation in arbitrary units, and determines the intensity of the coloring. The more recent the mutation, the lower the score and the darker the color.

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Protein coding sequences agreed upon by the Consensus Coding Sequence project, or CCDS.

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Track showing sequence in both directions. Only displayed at 1Kb and below.

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Track showing underlying assembly contigs.

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Track showing sequence in both directions. Only displayed at 1Kb and below.

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Variants that have been associated with a phenotype or a disease

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Variants genotyped by the 1000 Genomes project (phase 3)

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Features from Ensembl Regulatory Build.

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Chromosome 1: 162,135,916-162,136,517

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