Description
vacuolar protein sorting 53 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25608]
Gene Synonyms
FLJ10979, HCCS1, hVps53L, pp13624
Location
Chromosome 17: 411,908-624,957 reverse strand.
GRCh37:CM000679.1
About this gene
This gene has 21 transcripts (splice variants) and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000437048.2 | VPS53-001 | 13106 | 832aa | ENSP00000401435.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45558 | I3L4P9 Q5VIR6 Q8NCR1 | NM_001128159.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000446250.2 | VPS53-201 | 3204 | 501aa | ENSP00000394386.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V0H8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000291074.5 | VPS53-002 | 2656 | 670aa | ENSP00000291074.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10995 | Q5VIR6 | NM_018289.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000571805.1 | VPS53-006 | 2356 | 699aa | ENSP00000459312.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4P9 Q5VIR6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000401468.3 | VPS53-003 | 1269 | 422aa | ENSP00000384294.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7EVT8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000570650.1 | VPS53-019 | 729 | 237aa | ENSP00000458651.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L184 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000576019.1 | VPS53-011 | 613 | 68aa | ENSP00000461429.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4P9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000574029.1 | VPS53-020 | 585 | 145aa | ENSP00000459159.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1W6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000573028.1 | VPS53-005 | 3204 | 216aa | ENSP00000458311.1 | Nonsense mediated decay | I3L0S6 I3L4P9 | - | - | |
| ENST00000389040.5 | VPS53-004 | 1903 | 547aa | ENSP00000373692.5 | Nonsense mediated decay | F6VX93 I3L4P9 | - | - | |
| ENST00000576149.1 | VPS53-009 | 2444 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000571456.1 | VPS53-021 | 744 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000575207.1 | VPS53-015 | 575 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000570510.2 | VPS53-012 | 570 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000572334.2 | VPS53-013 | 561 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000541903.2 | VPS53-017 | 494 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000570359.1 | VPS53-010 | 2781 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000575100.1 | VPS53-022 | 1972 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000572607.1 | VPS53-016 | 732 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000572259.1 | VPS53-014 | 683 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570771.1 | VPS53-018 | 366 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
