Description
tRNA methyltransferase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25980]
Gene Synonyms
FLJ20244, TRM1
Location
Chromosome 19: 13,215,716-13,228,381 reverse strand.
GRCh37:CM000681.1
About this gene
This gene has 23 transcripts (splice variants), 1 paralogue and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000592062.1 | TRMT1-001 | 2579 | 659aa | ENSP00000466967.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12293 | B4DHS5 B4E3A3 K7EJX9 K7EQY6 Q9NXH9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000437766.1 | TRMT1-202 | 2263 | 659aa | ENSP00000416149.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12293 | B4DHS5 B4E3A3 K7EJX9 K7EQY6 Q9NXH9 | NM_017722.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000221504.8 | TRMT1-002 | 2179 | 630aa | ENSP00000221504.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45997 | K7EQY6 Q9NXH9 | NM_001142554.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000357720.4 | TRMT1-201 | 2142 | 659aa | ENSP00000350352.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12293 | B4DHS5 B4E3A3 K7EJX9 K7EQY6 Q9NXH9 | NM_001136035.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000592814.1 | TRMT1-019 | 985 | 297aa | ENSP00000467938.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EQQ8 K7EQY6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000587487.1 | TRMT1-012 | 813 | 191aa | ENSP00000465370.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EJX9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000588229.1 | TRMT1-020 | 552 | 145aa | ENSP00000467984.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EQU7 K7EQY6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000587633.1 | TRMT1-015 | 648 | 101aa | ENSP00000466716.1 | Nonsense mediated decay | K7EMZ2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000591717.1 | TRMT1-007 | 582 | 105aa | ENSP00000466966.1 | Nonsense mediated decay | K7ENI9 K7EQY6 | - | - | |
| ENST00000588746.1 | TRMT1-011 | 562 | 85aa | ENSP00000468031.1 | Nonsense mediated decay | K7EQY6 | - | - | |
| ENST00000586224.1 | TRMT1-008 | 543 | 113aa | ENSP00000468377.1 | Nonsense mediated decay | K7ERR5 | - | - | |
| ENST00000592892.1 | TRMT1-009 | 554 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000592729.1 | TRMT1-013 | 543 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000588813.1 | TRMT1-021 | 522 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000591425.1 | TRMT1-010 | 454 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000593257.1 | TRMT1-014 | 408 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000588511.1 | TRMT1-004 | 2251 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000593157.1 | TRMT1-003 | 2127 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000585622.1 | TRMT1-018 | 799 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000590812.1 | TRMT1-005 | 612 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000592606.1 | TRMT1-006 | 592 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000585435.1 | TRMT1-016 | 437 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000586830.1 | TRMT1-017 | 354 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
