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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYCP2 ENSG00000196074

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Description

synaptonemal complex protein 2 [Source:HGNC Symbol;Acc:11490]

Gene Synonyms

SCP2

Location

Chromosome 20: 58,438,618-58,508,710 reverse strand.

GRCh37:CM000682.1

About this gene

This gene has 9 transcripts (splice variants), 146 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357552.3	SYCP2-001	5567	1530aa	ENSP00000350162.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13482	A2A341 Q9BX26	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371001.2	SYCP2-201	5477	1530aa	ENSP00000360040.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13482	A2A341 Q9BX26	NM_014258.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000446834.1	SYCP2-002	3341	1023aa	ENSP00000402456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A341	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412613.1	SYCP2-008	625	208aa	ENSP00000404358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A340	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000425931.1	SYCP2-003	488	118aa	ENSP00000399300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A2M9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476314.1	SYCP2-004	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474749.1	SYCP2-007	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471331.1	SYCP2-005	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461538.1	SYCP2-006	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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