Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Gene Synonyms
C9orf164, CD100, FLJ39737, M-sema-G, SEMAJ, coll-4
Location
Chromosome 9: 91,975,702-92,113,045 reverse strand.
GRCh37:CM000671.1
About this gene
This gene has 25 transcripts (splice variants), 11 paralogues and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000450295.1 | SEMA4D-018 | 5684 | 862aa | ENSP00000416523.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000438547.2 | SEMA4D-004 | 4824 | 862aa | ENSP00000405102.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | NM_006378.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000356444.2 | SEMA4D-202 | 4503 | 862aa | ENSP00000348822.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000422704.2 | SEMA4D-005 | 4382 | 862aa | ENSP00000388768.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000420987.1 | SEMA4D-203 | 4275 | 738aa | ENSP00000391733.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | NM_001142287.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000339861.4 | SEMA4D-006 | 4258 | 738aa | ENSP00000344923.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000455551.2 | SEMA4D-001 | 3594 | 738aa | ENSP00000411981.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000343780.4 | SEMA4D-201 | 3146 | 738aa | ENSP00000343418.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000420101.2 | SEMA4D-008 | 1837 | 123aa | ENSP00000399948.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q92854 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000420681.2 | SEMA4D-013 | 907 | 146aa | ENSP00000390754.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 C9JFP1 C9JYS7 F5H044 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000540475.1 | SEMA4D-020 | 826 | 66aa | ENSP00000438389.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 F5H044 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000433650.1 | SEMA4D-016 | 602 | 75aa | ENSP00000413352.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 C9JYS7 F5H044 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000418828.1 | SEMA4D-014 | 563 | 59aa | ENSP00000416747.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000420670.1 | SEMA4D-015 | 433 | 1aa | ENSP00000405652.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000429836.1 | SEMA4D-003 | 2895 | 548aa | ENSP00000395222.1 | Nonsense mediated decay | C9JD54 C9JFP1 C9JYS7 E9PFD9 F5H044 | - | - | |
| ENST00000537934.1 | SEMA4D-019 | 2710 | 548aa | ENSP00000446394.1 | Nonsense mediated decay | C9JD54 C9JFP1 C9JYS7 E9PFD9 F5H044 | - | - | |
| ENST00000469653.1 | SEMA4D-009 | 3533 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475255.1 | SEMA4D-007 | 3053 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000482128.1 | SEMA4D-012 | 493 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464051.1 | SEMA4D-002 | 317 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000492386.1 | SEMA4D-010 | 2396 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486935.2 | SEMA4D-011 | 969 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000544513.1 | SEMA4D-021 | 599 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000474258.1 | SEMA4D-017 | 528 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000540183.1 | SEMA4D-022 | 176 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
