Description
lipopolysaccharide-induced TNF factor [Source:HGNC Symbol;Acc:16841]
Gene Synonyms
FLJ38636, PIG7, SIMPLE, TP53I7
Location
Chromosome 16: 11,641,853-11,730,237 reverse strand.
GRCh37:CM000678.1
About this gene
This gene has 19 transcripts (splice variants), 208 orthologues, 1 paralogue and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000571688.1 | LITAF-001 | 2357 | 161aa | ENSP00000459533.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32386 | I3L1H3 I3L1I9 I3L1R0 I3L329 I3L3U8 Q99732 | NM_001136472.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000339430.5 | LITAF-005 | 2356 | 161aa | ENSP00000340118.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32386 | I3L1H3 I3L1I9 I3L1R0 I3L329 I3L3U8 Q99732 | NM_004862.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000413364.2 | LITAF-002 | 2292 | 152aa | ENSP00000397958.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45411 | I3L1P1 I3L1R0 I3L329 Q99732 | NM_001136473.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000381810.3 | LITAF-201 | 1573 | 228aa | ENSP00000371231.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1R0 I3L329 Q99732 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000570904.1 | LITAF-006 | 1118 | 161aa | ENSP00000459138.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32386 | I3L1H3 I3L1I9 I3L1R0 I3L329 I3L3U8 Q99732 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000574763.1 | LITAF-010 | 717 | 161aa | ENSP00000461813.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32386 | I3L1H3 I3L1I9 I3L1R0 I3L329 I3L3U8 Q99732 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000571459.1 | LITAF-016 | 677 | 75aa | ENSP00000459603.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1R0 I3L2E2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000576036.1 | LITAF-017 | 603 | 161aa | ENSP00000461667.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32386 | I3L1H3 I3L1I9 I3L1R0 I3L329 I3L3U8 Q99732 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000570798.1 | LITAF-009 | 593 | 137aa | ENSP00000458871.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1I9 I3L1R0 I3L329 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000571277.1 | LITAF-013 | 587 | 39aa | ENSP00000459026.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1R0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000571627.1 | LITAF-012 | 579 | 153aa | ENSP00000460743.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1I9 I3L1R0 I3L329 I3L3U8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000576334.1 | LITAF-018 | 556 | 33aa | ENSP00000458538.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L133 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000574848.1 | LITAF-019 | 554 | 88aa | ENSP00000459898.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L133 I3L1R0 I3L2T1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000574701.1 | LITAF-007 | 553 | 136aa | ENSP00000458981.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1P1 I3L1R0 I3L329 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000571976.1 | LITAF-008 | 548 | 126aa | ENSP00000460133.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1R0 I3L329 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000572255.1 | LITAF-011 | 516 | 68aa | ENSP00000458836.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1H3 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000574703.1 | LITAF-004 | 486 | 105aa | ENSP00000459913.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1R0 I3L2T6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000573332.1 | LITAF-015 | 773 | 81aa | ENSP00000460873.1 | Nonsense mediated decay | I3L1R0 I3L409 | - | - | |
| ENST00000575426.1 | LITAF-014 | 582 | 10aa | ENSP00000459094.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
