Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]
Gene Synonyms
COLXIIIA1
Location
Chromosome 10: 71,561,644-71,724,031 forward strand.
GRCh37:CM000672.1
About this gene
This gene has 22 transcripts (splice variants), 9 paralogues and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000356340.3 | COL13A1-201 | 3136 | 717aa | ENSP00000348695.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G5E987 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398974.3 | COL13A1-209 | 3101 | 705aa | ENSP00000381946.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES46 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398972.3 | COL13A1-207 | 3094 | 703aa | ENSP00000381944.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES47 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398978.3 | COL13A1-001 | 3093 | 717aa | ENSP00000381949.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44419 | Q5TAT6 Q9UP45 | NM_001130103.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000398971.3 | COL13A1-206 | 3092 | 702aa | ENSP00000381943.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES49 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398968.3 | COL13A1-204 | 3080 | 698aa | ENSP00000381940.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES51 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398966.3 | COL13A1-203 | 3071 | 695aa | ENSP00000381938.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES55 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398973.3 | COL13A1-208 | 3058 | 691aa | ENSP00000381945.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PEG9 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398964.3 | COL13A1-202 | 3050 | 688aa | ENSP00000381936.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES56 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000354547.3 | COL13A1-002 | 3027 | 695aa | ENSP00000346553.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44424 | Q5TAT6 Q9UP45 | NM_080801.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000357811.3 | COL13A1-004 | 2991 | 683aa | ENSP00000350463.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5TAT6 Q9UP45 | NM_080802.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000398969.3 | COL13A1-205 | 2921 | 645aa | ENSP00000381941.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7ES50 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000520267.1 | COL13A1-011 | 2276 | 645aa | ENSP00000428057.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44427 | Q5TAT6 Q9UP45 | NM_080798.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000522165.1 | COL13A1-014 | 2061 | 686aa | ENSP00000428342.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44425 | Q5TAT6 Q9UP45 | NM_080800.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000517713.1 | COL13A1-013 | 2007 | 668aa | ENSP00000430061.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44423 | Q5TAT6 Q9UP45 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000520133.1 | COL13A1-015 | 1833 | 610aa | ENSP00000430173.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44428 | Q5TAT6 Q9UP45 | NM_080805.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000398975.2 | COL13A1-006 | 1057 | 247aa | ENSP00000381947.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000456019.1 | COL13A1-008 | 749 | 174aa | ENSP00000388774.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000479733.1 | COL13A1-003 | 2934 | 582aa | ENSP00000430089.1 | Nonsense mediated decay | E7EX21 Q9UP45 | - | - | |
| ENST00000484990.1 | COL13A1-007 | 360 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000518052.1 | COL13A1-012 | 290 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000478219.1 | COL13A1-009 | 2586 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
