Gene: COL25A1 ENSG00000188517

Description

collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:18603]

Gene Synonyms

AMY, CLAC, CLAC-P, CLACP

Location

Chromosome 4: 109,731,877-110,223,813 reverse strand.

GRCh37:CM000666.1

About this gene

This gene has 7 transcripts (splice variants), 9 paralogues and is associated with 2 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399132.1	COL25A1-001	2724	654aa	ENSP00000382083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43258	D6R8Y2 Q9BXS0	NM_198721.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399126.1	COL25A1-002	2674	642aa	ENSP00000382077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43259	D6R8Y2 Q4W5I4 Q9BXS0	NM_032518.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399127.1	COL25A1-003	2500	645aa	ENSP00000382078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58922	A8MWQ5 D6R8Y2	NM_001256074.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505591.1	COL25A1-005	428	70aa	ENSP00000422266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R8Y2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512961.1	COL25A1-007	316	29aa	ENSP00000426841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494183.1	COL25A1-004	4630	496aa	ENSP00000437131.1	Nonsense mediated decay		D6R8Y2 E9PNV9	-	-
ENST00000505377.1	COL25A1-006	448	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: COL25A1 ENSG00000188517

Summary