Gene: LAMP2 ENSG00000005893

Description

lysosomal-associated membrane protein 2 [Source:HGNC Symbol;Acc:6501]

Gene Synonyms

CD107b, LAMP-2, LAMPB, LGP110

Location

Chromosome X: 119,561,682-119,603,220 reverse strand.

GRCh37:CM000685.1

About this gene

This gene has 6 transcripts (splice variants), 3 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000434600.2	LAMP2-004	2089	411aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48159	P13473	NM_002294.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371335.4	LAMP2-002	4030	410aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14600	B4E2S7 P13473	NM_013995.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000200639.4	LAMP2-001	1867	410aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14599	P13473	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540603.1	LAMP2-202	1625	363aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2S7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000538785.1	LAMP2-201	1433	300aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2R9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000486593.1	LAMP2-003	1069	258aa	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Name

LAMP2 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P13473

CCDS

This gene is a member of the Human CCDS set: CCDS14599.1, CCDS14600.1, CCDS48159.1

Ensembl version

ENSG00000005893.11

Other assemblies

This gene maps to 120,427,827-120,469,365 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000022301 (version 4)

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Gene: LAMP2 ENSG00000005893

Summary