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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COLGALT1 ENSG00000130309

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Description

collagen beta(1-O)galactosyltransferase 1 [Source:HGNC Symbol;Acc:26182]

Gene Synonyms

FLJ22329, GLT25D1

Location

Chromosome 19: 17,666,403-17,693,971 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 6 transcripts (splice variants) and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252599.4	COLGALT1-001	3704	622aa	ENSP00000252599.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12363	B3KQ10 M0QYH0 Q8NBJ5 Q8WUI9	NM_024656.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000597147.1	COLGALT1-007	654	218aa	ENSP00000468947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600474.1	COLGALT1-005	552	138aa	ENSP00000469817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYH0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601354.1	COLGALT1-006	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593832.1	COLGALT1-004	2941	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597075.1	COLGALT1-008	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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