Description
collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]
Gene Synonyms
DJ149L1.1.2, EDM6, MED, STL4
Location
Chromosome 6: 70,924,764-71,012,786 reverse strand.
GRCh37:CM000668.1
About this gene
This gene has 11 transcripts (splice variants), 9 paralogues and is associated with 9 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000357250.6 | COL9A1-001 | 4761 | 921aa | ENSP00000349790.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS4971 | P20849 | NM_001851.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000320755.7 | COL9A1-002 | 3059 | 678aa | ENSP00000315252.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47447 | P20849 | NM_078485.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000370499.4 | COL9A1-201 | 2893 | 678aa | ENSP00000359530.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6NEQ6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000370496.3 | COL9A1-004 | 1372 | 328aa | ENSP00000359527.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P20849 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000489611.1 | COL9A1-009 | 1940 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000486080.1 | COL9A1-008 | 1844 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000360859.6 | COL9A1-010 | 699 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000447041.2 | COL9A1-007 | 690 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493682.2 | COL9A1-005 | 1117 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000470652.1 | COL9A1-003 | 531 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000489861.2 | COL9A1-006 | 243 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
