Gene: COL27A1 ENSG00000196739

Description

collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:22986]

Gene Synonyms

FLJ11895, KIAA1870, MGC11337

Location

GRCh37:CM000671.1

About this gene

This gene has 8 transcripts (splice variants), 17 paralogues and is associated with 3 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356083.3	COL27A1-001	7790	1860aa	ENSP00000348385.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6802	Q8IZC6	NM_032888.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451716.1	COL27A1-004	2865	714aa	ENSP00000391328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T1U7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494090.2	COL27A1-002	5329	485aa	ENSP00000432928.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477421.2	COL27A1-006	3991	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468565.1	COL27A1-003	1946	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490831.1	COL27A1-008	666	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494780.1	COL27A1-007	514	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485397.1	COL27A1-005	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary