Description
beta-1,4-N-acetyl-galactosaminyl transferase 1 [Source:HGNC Symbol;Acc:4117]
Gene Synonyms
GALGT, GALNACT, GalNAc-T, SIAT2, SPG26, beta1-4GalNAc-T
Location
Chromosome 12: 58,017,193-58,027,138 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 16 transcripts (splice variants), 1 paralogue and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000341156.4 | B4GALNT1-002 | 3036 | 533aa | ENSP00000341562.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8950 | F8TDK4 F8VR44 F8VU35 F8VW33 Q00973 | NM_001478.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000550764.1 | B4GALNT1-004 | 1967 | 328aa | ENSP00000450303.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61171 | F8TDK7 F8VR44 F8VU35 F8VW33 Q8N636 | NM_001276469.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000418555.2 | B4GALNT1-006 | 1861 | 478aa | ENSP00000401601.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61170 | B4DE26 F8TDK5 | NM_001276468.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000552350.1 | B4GALNT1-005 | 1649 | 328aa | ENSP00000448500.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61171 | F8TDK7 F8VR44 F8VU35 F8VW33 Q8N636 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000449184.3 | B4GALNT1-003 | 1633 | 304aa | ENSP00000473533.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DSP5 F8TDK6 F8VR44 F8VU35 F8VW33 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000548888.1 | B4GALNT1-014 | 841 | 237aa | ENSP00000447945.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VR44 F8VU35 F8VW33 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000551220.1 | B4GALNT1-010 | 837 | 120aa | ENSP00000446566.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VR44 F8VW33 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000547741.1 | B4GALNT1-016 | 453 | 151aa | ENSP00000448577.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000552798.1 | B4GALNT1-007 | 1945 | 231aa | ENSP00000447076.1 | Nonsense mediated decay | F8VR44 F8VW33 F8W1A7 | - | - | |
| ENST00000549391.1 | B4GALNT1-015 | 879 | 127aa | ENSP00000447750.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000548487.1 | B4GALNT1-013 | 562 | 81aa | ENSP00000449534.1 | Nonsense mediated decay | F8VW33 | - | - | |
| ENST00000552219.1 | B4GALNT1-011 | 502 | 96aa | ENSP00000448340.1 | Nonsense mediated decay | F8VSE0 | - | - | |
| ENST00000550943.1 | B4GALNT1-012 | 482 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000553142.1 | B4GALNT1-001 | 5580 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000552468.1 | B4GALNT1-009 | 2538 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000551925.1 | B4GALNT1-008 | 1003 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
