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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PRPF40A ENSG00000196504

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Description

PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:16463]

Gene Synonyms

FBP-11, FBP11, FLAF1, FLJ20585, FNBP3, HIP-10, HIP10, HYPA, NY-REN-6, Prp40

Location

Chromosome 2: 153,508,107-153,574,511 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 12 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000410080.1	PRPF40A-001	8048	930aa	ENSP00000386458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46430	O75400 Q4ZG51	NM_017892.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545856.1	PRPF40A-004	1358	448aa	ENSP00000444656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H578	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493468.2	PRPF40A-016	1043	346aa	ENSP00000441656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YG38	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000448428.1	PRPF40A-008	490	163aa	ENSP00000406924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2N3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000354363.6	PRPF40A-015	1622	109aa	ENSP00000346332.6	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486100.1	PRPF40A-003	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489741.1	PRPF40A-006	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467114.2	PRPF40A-009	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000450303.2	PRPF40A-002	496	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471167.1	PRPF40A-013	333	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471701.1	PRPF40A-014	293	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472760.1	PRPF40A-012	243	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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