Description
SATB homeobox 1 [Source:HGNC Symbol;Acc:10541]
Location
Chromosome 3: 18,386,879-18,487,080 reverse strand.
GRCh37:CM000665.1
About this gene
This gene has 18 transcripts (splice variants), 1 paralogue and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000338745.6 | SATB1-001 | 7810 | 763aa | ENSP00000341024.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2631 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_002971.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000417717.2 | SATB1-004 | 4589 | 795aa | ENSP00000399518.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56242 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_001195470.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000454909.2 | SATB1-002 | 2968 | 763aa | ENSP00000399708.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2631 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_001131010.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000440737.1 | SATB1-008 | 975 | 224aa | ENSP00000402982.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000452260.2 | SATB1-015 | 939 | 172aa | ENSP00000406727.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZC5 C9J3I0 C9J7F3 C9JGL9 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000493952.2 | SATB1-009 | 626 | 82aa | ENSP00000453908.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YN86 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000415069.1 | SATB1-006 | 594 | 166aa | ENSP00000390529.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JGL9 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414509.1 | SATB1-011 | 583 | 116aa | ENSP00000408871.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444341.1 | SATB1-012 | 579 | 70aa | ENSP00000391344.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000457005.1 | SATB1-014 | 564 | 129aa | ENSP00000398072.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000450898.1 | SATB1-013 | 464 | 8aa | ENSP00000394520.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000475083.1 | SATB1-016 | 558 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000606296.1 | SATB1-022 | 4200 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000491519.3 | SATB1-017 | 996 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000467628.1 | SATB1-020 | 551 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000487699.1 | SATB1-010 | 477 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482788.1 | SATB1-018 | 406 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000476178.1 | SATB1-021 | 361 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
